Approximate Hamming distance in a stream
February 23, 2016 Β· Declared Dead Β· π International Colloquium on Automata, Languages and Programming
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Authors
Raphael Clifford, Tatiana Starikovskaya
arXiv ID
1602.07241
Category
cs.DS: Data Structures & Algorithms
Citations
22
Venue
International Colloquium on Automata, Languages and Programming
Last Checked
3 months ago
Abstract
We consider the problem of computing a $(1+Ξ΅)$-approximation of the Hamming distance between a pattern of length $n$ and successive substrings of a stream. We first look at the one-way randomised communication complexity of this problem, giving Alice the first half of the stream and Bob the second half. We show the following: (1) If Alice and Bob both share the pattern then there is an $O(Ξ΅^{-4} \log^2 n)$ bit randomised one-way communication protocol. (2) If only Alice has the pattern then there is an $O(Ξ΅^{-2}\sqrt{n}\log n)$ bit randomised one-way communication protocol. We then go on to develop small space streaming algorithms for $(1+Ξ΅)$-approximate Hamming distance which give worst case running time guarantees per arriving symbol. (1) For binary input alphabets there is an $O(Ξ΅^{-3} \sqrt{n} \log^{2} n)$ space and $O(Ξ΅^{-2} \log{n})$ time streaming $(1+Ξ΅)$-approximate Hamming distance algorithm. (2) For general input alphabets there is an $O(Ξ΅^{-5} \sqrt{n} \log^{4} n)$ space and $O(Ξ΅^{-4} \log^3 {n})$ time streaming $(1+Ξ΅)$-approximate Hamming distance algorithm.
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