Deterministic Indexing for Packed Strings

December 06, 2016 Β· Declared Dead Β· πŸ› Annual Symposium on Combinatorial Pattern Matching

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Authors Philip Bille, Inge Li GΓΈrtz, Frederik Rye Skjoldjensen arXiv ID 1612.01748 Category cs.DS: Data Structures & Algorithms Citations 23 Venue Annual Symposium on Combinatorial Pattern Matching Last Checked 3 months ago
Abstract
Given a string $S$ of length $n$, the classic string indexing problem is to preprocess $S$ into a compact data structure that supports efficient subsequent pattern queries. In the \emph{deterministic} variant the goal is to solve the string indexing problem without any randomization (at preprocessing time or query time). In the \emph{packed} variant the strings are stored with several character in a single word, giving us the opportunity to read multiple characters simultaneously. Our main result is a new string index in the deterministic \emph{and} packed setting. Given a packed string $S$ of length $n$ over an alphabet $Οƒ$, we show how to preprocess $S$ in $O(n)$ (deterministic) time and space $O(n)$ such that given a packed pattern string of length $m$ we can support queries in (deterministic) time $O\left(m/Ξ±+ \log m + \log \log Οƒ\right), $ where $Ξ±= w / \log Οƒ$ is the number of characters packed in a word of size $w = Θ(\log n)$. Our query time is always at least as good as the previous best known bounds and whenever several characters are packed in a word, i.e., $\log Οƒ\ll w$, the query times are faster.
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