A hardness result and new algorithm for the longest common palindromic subsequence problem

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Authors Shunsuke Inenaga, Heikki HyyrΓΆ arXiv ID 1612.07475 Category cs.DS: Data Structures & Algorithms Citations 18 Venue Information Processing Letters Last Checked 3 months ago
Abstract
The 2-LCPS problem, first introduced by Chowdhury et al. [Fundam. Inform., 129(4):329-340, 2014], asks one to compute (the length of) a longest palindromic common subsequence between two given strings $A$ and $B$. We show that the 2-LCPS problem is at least as hard as the well-studied longest common subsequence problem for four strings (the 4-LCS problem). Then, we present a new algorithm which solves the 2-LCPS problem in $O(ΟƒM^2 + n)$ time, where $n$ denotes the length of $A$ and $B$, $M$ denotes the number of matching positions between $A$ and $B$, and $Οƒ$ denotes the number of distinct characters occurring in both $A$ and $B$. Our new algorithm is faster than Chowdhury et al.'s sparse algorithm when $Οƒ= o(\log^2n \log\log n)$.
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