Characterizing Star-PCGs

April 09, 2018 Β· Declared Dead Β· πŸ› Algorithmica

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Authors Mingyu Xiao, Hiroshi Nagamochi arXiv ID 1804.02895 Category cs.DS: Data Structures & Algorithms Cross-listed cs.DM, math.CO Citations 9 Venue Algorithmica Last Checked 4 months ago
Abstract
A graph $G$ is called a pairwise compatibility graph (PCG, for short) if it admits a tuple $(T,w, d_{\min},d_{\max})$ of a tree $T$ whose leaf set is equal to the vertex set of $G$, a non-negative edge weight $w$, and two non-negative reals $d_{\min}\leq d_{\max}$ such that $G$ has an edge between two vertices $u,v\in V$ if and only if the distance between the two leaves $u$ and $v$ in the weighted tree $(T,w)$ is in the interval $[d_{\min}, d_{\max}]$. The tree $T$ is also called a witness tree of the PCG $G$. The problem of testing if a given graph is a PCG is not known to be NP-hard yet. To obtain a complete characterization of PCGs is a wide open problem in computational biology and graph theory. In literature, most witness trees admitted by known PCGs are stars and caterpillars. In this paper, we give a complete characterization for a graph to be a star-PCG (a PCG that admits a star as its witness tree), which provides us the first polynomial-time algorithm for recognizing star-PCGs.
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