Sickle-cell disease diagnosis support selecting the most appropriate machinelearning method: Towards a general and interpretable approach for cellmorphology analysis from microscopy images
October 09, 2020 ยท Declared Dead ยท ๐ Comput. Biol. Medicine
"No code URL or promise found in abstract"
Evidence collected by the PWNC Scanner
Authors
Nataลกa Petroviฤ, Gabriel Moyร -Alcover, Antoni Jaume-i-Capรณ, Manuel Gonzรกlez-Hidalgo
arXiv ID
2010.04511
Category
cs.LG: Machine Learning
Cross-listed
cs.CV,
eess.IV
Citations
44
Venue
Comput. Biol. Medicine
Last Checked
6 months ago
Abstract
In this work we propose an approach to select the classification method and features, based on the state-of-the-art, with best performance for diagnostic support through peripheral blood smear images of red blood cells. In our case we used samples of patients with sickle-cell disease which can be generalized for other study cases. To trust the behavior of the proposed system, we also analyzed the interpretability. We pre-processed and segmented microscopic images, to ensure high feature quality. We applied the methods used in the literature to extract the features from blood cells and the machine learning methods to classify their morphology. Next, we searched for their best parameters from the resulting data in the feature extraction phase. Then, we found the best parameters for every classifier using Randomized and Grid search. For the sake of scientific progress, we published parameters for each classifier, the implemented code library, the confusion matrices with the raw data, and we used the public erythrocytesIDB dataset for validation. We also defined how to select the most important features for classification to decrease the complexity and the training time, and for interpretability purpose in opaque models. Finally, comparing the best performing classification methods with the state-of-the-art, we obtained better results even with interpretable model classifiers.
Community Contributions
Found the code? Know the venue? Think something is wrong? Let us know!
๐ Similar Papers
In the same crypt โ Machine Learning
๐ฎ
๐ฎ
The Ethereal
๐ฎ
๐ฎ
The Ethereal
Continuous control with deep reinforcement learning
๐
๐
Old Age
Model-Agnostic Meta-Learning for Fast Adaptation of Deep Networks
๐
๐
Old Age
Soft Actor-Critic: Off-Policy Maximum Entropy Deep Reinforcement Learning with a Stochastic Actor
๐
๐
Old Age
SGDR: Stochastic Gradient Descent with Warm Restarts
๐ฎ
๐ฎ
The Ethereal
Asynchronous Methods for Deep Reinforcement Learning
Died the same way โ ๐ป Ghosted
R.I.P.
๐ป
Ghosted
Federated Learning: Strategies for Improving Communication Efficiency
R.I.P.
๐ป
Ghosted
In-Datacenter Performance Analysis of a Tensor Processing Unit
R.I.P.
๐ป
Ghosted
Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning
R.I.P.
๐ป
Ghosted