DiffCMR: Fast Cardiac MRI Reconstruction with Diffusion Probabilistic Models

December 08, 2023 Β· Entered Twilight Β· πŸ› STACOM@MICCAI

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Repo contents: CMRxRecon.py, data_task1.ipynb, data_task2.ipynb, improved_diffusion, inference.py, readme.md, train_task1_diff.py, train_task2_diff.py

Authors Tianqi Xiang, Wenjun Yue, Yiqun Lin, Jiewen Yang, Zhenkun Wang, Xiaomeng Li arXiv ID 2312.04853 Category eess.IV: Image & Video Processing Cross-listed cs.CV Citations 5 Venue STACOM@MICCAI Repository https://github.com/xmed-lab/DiffCMR ⭐ 13 Last Checked 1 month ago
Abstract
Performing magnetic resonance imaging (MRI) reconstruction from under-sampled k-space data can accelerate the procedure to acquire MRI scans and reduce patients' discomfort. The reconstruction problem is usually formulated as a denoising task that removes the noise in under-sampled MRI image slices. Although previous GAN-based methods have achieved good performance in image denoising, they are difficult to train and require careful tuning of hyperparameters. In this paper, we propose a novel MRI denoising framework DiffCMR by leveraging conditional denoising diffusion probabilistic models. Specifically, DiffCMR perceives conditioning signals from the under-sampled MRI image slice and generates its corresponding fully-sampled MRI image slice. During inference, we adopt a multi-round ensembling strategy to stabilize the performance. We validate DiffCMR with cine reconstruction and T1/T2 mapping tasks on MICCAI 2023 Cardiac MRI Reconstruction Challenge (CMRxRecon) dataset. Results show that our method achieves state-of-the-art performance, exceeding previous methods by a significant margin. Code is available at https://github.com/xmed-lab/DiffCMR.
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